#include <test_invM.h>

Inheritance diagram for testInvM< dim, degree >:

Public Member Functions
	testInvM (userInputParameters< dim > _userInputs)

	~testInvM ()

void	setBCs ()

void	setInitialCondition (const dealii::Point< dim > &p, const unsigned int index, double &scalar_IC, dealii::Vector< double > &vector_IC)

void	setNonUniformDirichletBCs (const dealii::Point< dim > &p, const unsigned int index, const unsigned int direction, const double time, double &scalar_BC, dealii::Vector< double > &vector_BC)

Public Member Functions inherited from MatrixFreePDE< dim, degree >
	MatrixFreePDE (userInputParameters< dim >)

	~MatrixFreePDE ()

virtual void	init ()

virtual void	makeTriangulation (parallel::distributed::Triangulation< dim > &) const

void	initForTests ()

void	solve ()

void	vmult (vectorType &dst, const vectorType &src) const

void	buildFields ()

Public Attributes
double	invMNorm

Public Attributes inherited from MatrixFreePDE< dim, degree >
std::vector< Field< dim > >	fields

ConditionalOStream	pcout

Private Member Functions
void	getRHS (const MatrixFree< dim, double > &data, std::vector< vectorType > &dst, const std::vector< vectorType > &src, const std::pair< unsigned int, unsigned int > &cell_range) const

void	explicitEquationRHS (variableContainer< dim, degree, dealii::VectorizedArray< double > > &variable_list, dealii::Point< dim, dealii::VectorizedArray< double > > q_point_loc) const

void	nonExplicitEquationRHS (variableContainer< dim, degree, dealii::VectorizedArray< double > > &variable_list, dealii::Point< dim, dealii::VectorizedArray< double > > q_point_loc) const

void	equationLHS (variableContainer< dim, degree, dealii::VectorizedArray< double > > &variable_list, dealii::Point< dim, dealii::VectorizedArray< double > > q_point_loc) const

Additional Inherited Members
Protected Member Functions inherited from MatrixFreePDE< dim, degree >
void	reinit ()

void	reassignGrains ()

virtual void	solveIncrement (bool skip_time_dependent)

void	outputResults ()

void	computeInvM ()

void	refineGrid ()

void	adaptiveRefine (unsigned int _currentIncrement)

virtual void	adaptiveRefineCriterion ()

void	computeExplicitRHS ()

void	computeNonexplicitRHS ()

void	getLHS (const MatrixFree< dim, double > &data, vectorType &dst, const vectorType &src, const std::pair< unsigned int, unsigned int > &cell_range) const

void	getLaplaceLHS (const MatrixFree< dim, double > &data, vectorType &dst, const vectorType &src, const std::pair< unsigned int, unsigned int > &cell_range) const

void	setNonlinearEqInitialGuess ()

void	computeLaplaceRHS (unsigned int fieldIndex)

void	getLaplaceRHS (const MatrixFree< dim, double > &data, vectorType &dst, const vectorType &src, const std::pair< unsigned int, unsigned int > &cell_range) const

void	getExplicitRHS (const MatrixFree< dim, double > &data, std::vector< vectorType > &dst, const std::vector< vectorType > &src, const std::pair< unsigned int, unsigned int > &cell_range) const

void	getNonexplicitRHS (const MatrixFree< dim, double > &data, std::vector< vectorType > &dst, const std::vector< vectorType > &src, const std::pair< unsigned int, unsigned int > &cell_range) const

virtual void	postProcessedFields (const variableContainer< dim, degree, dealii::VectorizedArray< double > > &variable_list, variableContainer< dim, degree, dealii::VectorizedArray< double > > &pp_variable_list, const dealii::Point< dim, dealii::VectorizedArray< double > > q_point_loc) const

void	computePostProcessedFields (std::vector< vectorType *> &postProcessedSet)

void	getPostProcessedFields (const dealii::MatrixFree< dim, double > &data, std::vector< vectorType > &dst, const std::vector< vectorType > &src, const std::pair< unsigned int, unsigned int > &cell_range)

void	markBoundaries (parallel::distributed::Triangulation< dim > &) const

void	applyDirichletBCs ()

void	applyNeumannBCs ()

void	setPeriodicity ()

void	setPeriodicityConstraints (ConstraintMatrix , const DoFHandler< dim > ) const

void	getComponentsWithRigidBodyModes (std::vector< int > &) const

void	setRigidBodyModeConstraints (const std::vector< int >, ConstraintMatrix , const DoFHandler< dim > ) const

void	applyInitialConditions ()

void	save_checkpoint ()

void	load_checkpoint_triangulation ()

void	load_checkpoint_fields ()

void	load_checkpoint_time_info ()

void	move_file (const std::string &, const std::string &)

void	verify_checkpoint_file_exists (const std::string filename)

void	updateNucleiList ()

std::vector< nucleus< dim > >	getNewNuclei ()

void	getLocalNucleiList (std::vector< nucleus< dim > > &newnuclei) const

void	safetyCheckNewNuclei (std::vector< nucleus< dim > > newnuclei, std::vector< unsigned int > &conflict_ids)

void	refineMeshNearNuclei (std::vector< nucleus< dim > > newnuclei)

double	weightedDistanceFromNucleusCenter (const dealii::Point< dim, double > center, const std::vector< double > semiaxes, const dealii::Point< dim, double > q_point_loc, const unsigned int var_index) const

dealii::VectorizedArray< double >	weightedDistanceFromNucleusCenter (const dealii::Point< dim, double > center, const std::vector< double > semiaxes, const dealii::Point< dim, dealii::VectorizedArray< double > > q_point_loc, const unsigned int var_index) const

virtual double	getNucleationProbability (variableValueContainer, double, dealii::Point< dim >, unsigned int variable_index) const

unsigned int	getFieldIndex (std::string _name)

void	outputFreeEnergy (const std::vector< double > &freeEnergyValues) const

void	computeIntegral (double &integratedField, int index, std::vector< vectorType *> postProcessedSet)

void	computeIntegralMF (double &integratedField, int index, const std::vector< vectorType *> postProcessedSet)

void	getIntegralMF (const MatrixFree< dim, double > &data, std::vector< vectorType > &dst, const std::vector< vectorType > &src, const std::pair< unsigned int, unsigned int > &cell_range)

Protected Attributes inherited from MatrixFreePDE< dim, degree >
userInputParameters< dim >	userInputs

unsigned int	totalDOFs

variableAttributeLoader	var_attributes

std::vector< SimplifiedGrainRepresentation< dim > >	simplified_grain_representations

parallel::distributed::Triangulation< dim >	triangulation

std::vector< FESystem< dim > * >	FESet

std::vector< const ConstraintMatrix * >	constraintsDirichletSet

std::vector< const ConstraintMatrix * >	constraintsOtherSet

std::vector< const DoFHandler< dim > * >	dofHandlersSet

std::vector< const IndexSet * >	locally_relevant_dofsSet

std::vector< ConstraintMatrix * >	constraintsDirichletSet_nonconst

std::vector< ConstraintMatrix * >	constraintsOtherSet_nonconst

std::vector< DoFHandler< dim > * >	dofHandlersSet_nonconst

std::vector< IndexSet * >	locally_relevant_dofsSet_nonconst

std::vector< vectorType * >	solutionSet

std::vector< vectorType * >	residualSet

std::vector< parallel::distributed::SolutionTransfer< dim, vectorType > * >	soltransSet

DoFHandler< dim > *	vector_dofHandler

FESystem< dim > *	vector_fe

MatrixFree< dim, double >	vector_matrixFreeObject

MatrixFree< dim, double >	matrixFreeObject

vectorType	invM

vectorType	dU_vector

vectorType	dU_scalar

unsigned int	currentFieldIndex

bool	generatingInitialGuess

std::vector< std::map< dealii::types::global_dof_index, double > * >	valuesDirichletSet

std::vector< nucleus< dim > >	nuclei

std::vector< double >	freeEnergyValues

bool	isTimeDependentBVP

bool	isEllipticBVP

bool	hasExplicitEquation

bool	hasNonExplicitEquation

bool	has_Dirichlet_BCs

unsigned int	parabolicFieldIndex

unsigned int	ellipticFieldIndex

double	currentTime

unsigned int	currentIncrement

unsigned int	currentOutput

unsigned int	currentCheckpoint

unsigned int	current_grain_reassignment

TimerOutput	computing_timer

std::vector< double >	integrated_postprocessed_fields

bool	first_integrated_var_output_complete

double	integrated_var

unsigned int	integral_index

dealii::Threads::Mutex	assembler_lock

Static Protected Attributes inherited from MatrixFreePDE< dim, degree >
static const unsigned int	CIJ_tensor_size = 2*dim-1+dim/3

Detailed Description

template<int dim, int degree>
class testInvM< dim, degree >

Definition at line 3 of file test_invM.h.

Constructor & Destructor Documentation

◆ testInvM()

testInvM ( userInputParameters< dim > _userInputs )

inline

Definition at line 6 of file test_invM.h.

◆ ~testInvM()

~testInvM ( )

inline

Definition at line 20 of file test_invM.h.

Member Function Documentation

◆ equationLHS()

void equationLHS	(	variableContainer< dim, degree, dealii::VectorizedArray< double > > &	variable_list,
		dealii::Point< dim, dealii::VectorizedArray< double > >	q_point_loc
	)		const

inlineprivatevirtual

Implements MatrixFreePDE< dim, degree >.

Definition at line 50 of file test_invM.h.

◆ explicitEquationRHS()

void explicitEquationRHS	(	variableContainer< dim, degree, dealii::VectorizedArray< double > > &	variable_list,
		dealii::Point< dim, dealii::VectorizedArray< double > >	q_point_loc
	)		const

inlineprivatevirtual

Implements MatrixFreePDE< dim, degree >.

Definition at line 42 of file test_invM.h.

◆ getRHS()

void getRHS	(	const MatrixFree< dim, double > &	data,
		std::vector< vectorType *> &	dst,
		const std::vector< vectorType *> &	src,
		const std::pair< unsigned int, unsigned int > &	cell_range
	)		const

inlineprivate

Definition at line 36 of file test_invM.h.

◆ nonExplicitEquationRHS()

void nonExplicitEquationRHS	(	variableContainer< dim, degree, dealii::VectorizedArray< double > > &	variable_list,
		dealii::Point< dim, dealii::VectorizedArray< double > >	q_point_loc
	)		const

inlineprivatevirtual

Implements MatrixFreePDE< dim, degree >.

Definition at line 46 of file test_invM.h.

◆ setBCs()

void setBCs ( )

inline

Definition at line 26 of file test_invM.h.

◆ setInitialCondition()

void setInitialCondition	(	const dealii::Point< dim > &	p,
		const unsigned int	index,
		double &	scalar_IC,
		dealii::Vector< double > &	vector_IC
	)

inlinevirtual

Implements MatrixFreePDE< dim, degree >.

Definition at line 29 of file test_invM.h.

◆ setNonUniformDirichletBCs()

void setNonUniformDirichletBCs	(	const dealii::Point< dim > &	p,
		const unsigned int	index,
		const unsigned int	direction,
		const double	time,
		double &	scalar_BC,
		dealii::Vector< double > &	vector_BC
	)

inlinevirtual

Implements MatrixFreePDE< dim, degree >.

Definition at line 32 of file test_invM.h.

Member Data Documentation

◆ invMNorm

double invMNorm

Definition at line 22 of file test_invM.h.

The documentation for this class was generated from the following file:

tests/unit_tests/test_invM.h

Public Member Functions

Public Attributes

Private Member Functions

Additional Inherited Members

Detailed Description

template<int dim, int degree> class testInvM< dim, degree >

Constructor & Destructor Documentation

◆ testInvM()

◆ ~testInvM()

Member Function Documentation

◆ equationLHS()

◆ explicitEquationRHS()

◆ getRHS()

◆ nonExplicitEquationRHS()

◆ setBCs()

◆ setInitialCondition()

◆ setNonUniformDirichletBCs()

Member Data Documentation

◆ invMNorm

template<int dim, int degree>
class testInvM< dim, degree >