PRISMS-PF  v2.1
Public Member Functions | Public Attributes | Protected Member Functions | Protected Attributes | Static Protected Attributes | List of all members
MatrixFreePDE< dim, degree > Class Template Referenceabstract

#include <matrixFreePDE.h>

Inheritance diagram for MatrixFreePDE< dim, degree >:
setRigidBodyModeConstraintsTest< dim, degree > testInvM< dim, degree > testOutputResults< dim, degree >

Public Member Functions

 MatrixFreePDE (userInputParameters< dim >)
 
 ~MatrixFreePDE ()
 
virtual void init ()
 
virtual void makeTriangulation (parallel::distributed::Triangulation< dim > &) const
 
void initForTests ()
 
void solve ()
 
void vmult (vectorType &dst, const vectorType &src) const
 
void buildFields ()
 
virtual void setInitialCondition (const dealii::Point< dim > &p, const unsigned int index, double &scalar_IC, dealii::Vector< double > &vector_IC)=0
 
virtual void setNonUniformDirichletBCs (const dealii::Point< dim > &p, const unsigned int index, const unsigned int direction, const double time, double &scalar_BC, dealii::Vector< double > &vector_BC)=0
 

Public Attributes

std::vector< Field< dim > > fields
 
ConditionalOStream pcout
 

Protected Member Functions

void reinit ()
 
void reassignGrains ()
 
virtual void solveIncrement (bool skip_time_dependent)
 
void outputResults ()
 
void computeInvM ()
 
void refineGrid ()
 
void adaptiveRefine (unsigned int _currentIncrement)
 
virtual void adaptiveRefineCriterion ()
 
void computeExplicitRHS ()
 
void computeNonexplicitRHS ()
 
void getLHS (const MatrixFree< dim, double > &data, vectorType &dst, const vectorType &src, const std::pair< unsigned int, unsigned int > &cell_range) const
 
void getLaplaceLHS (const MatrixFree< dim, double > &data, vectorType &dst, const vectorType &src, const std::pair< unsigned int, unsigned int > &cell_range) const
 
void setNonlinearEqInitialGuess ()
 
void computeLaplaceRHS (unsigned int fieldIndex)
 
void getLaplaceRHS (const MatrixFree< dim, double > &data, vectorType &dst, const vectorType &src, const std::pair< unsigned int, unsigned int > &cell_range) const
 
void getExplicitRHS (const MatrixFree< dim, double > &data, std::vector< vectorType *> &dst, const std::vector< vectorType *> &src, const std::pair< unsigned int, unsigned int > &cell_range) const
 
void getNonexplicitRHS (const MatrixFree< dim, double > &data, std::vector< vectorType *> &dst, const std::vector< vectorType *> &src, const std::pair< unsigned int, unsigned int > &cell_range) const
 
virtual void explicitEquationRHS (variableContainer< dim, degree, dealii::VectorizedArray< double > > &variable_list, dealii::Point< dim, dealii::VectorizedArray< double > > q_point_loc) const =0
 
virtual void nonExplicitEquationRHS (variableContainer< dim, degree, dealii::VectorizedArray< double > > &variable_list, dealii::Point< dim, dealii::VectorizedArray< double > > q_point_loc) const =0
 
virtual void equationLHS (variableContainer< dim, degree, dealii::VectorizedArray< double > > &variable_list, dealii::Point< dim, dealii::VectorizedArray< double > > q_point_loc) const =0
 
virtual void postProcessedFields (const variableContainer< dim, degree, dealii::VectorizedArray< double > > &variable_list, variableContainer< dim, degree, dealii::VectorizedArray< double > > &pp_variable_list, const dealii::Point< dim, dealii::VectorizedArray< double > > q_point_loc) const
 
void computePostProcessedFields (std::vector< vectorType *> &postProcessedSet)
 
void getPostProcessedFields (const dealii::MatrixFree< dim, double > &data, std::vector< vectorType *> &dst, const std::vector< vectorType *> &src, const std::pair< unsigned int, unsigned int > &cell_range)
 
void markBoundaries (parallel::distributed::Triangulation< dim > &) const
 
void applyDirichletBCs ()
 
void applyNeumannBCs ()
 
void setPeriodicity ()
 
void setPeriodicityConstraints (ConstraintMatrix *, const DoFHandler< dim > *) const
 
void getComponentsWithRigidBodyModes (std::vector< int > &) const
 
void setRigidBodyModeConstraints (const std::vector< int >, ConstraintMatrix *, const DoFHandler< dim > *) const
 
void applyInitialConditions ()
 
void save_checkpoint ()
 
void load_checkpoint_triangulation ()
 
void load_checkpoint_fields ()
 
void load_checkpoint_time_info ()
 
void move_file (const std::string &, const std::string &)
 
void verify_checkpoint_file_exists (const std::string filename)
 
void updateNucleiList ()
 
std::vector< nucleus< dim > > getNewNuclei ()
 
void getLocalNucleiList (std::vector< nucleus< dim > > &newnuclei) const
 
void safetyCheckNewNuclei (std::vector< nucleus< dim > > newnuclei, std::vector< unsigned int > &conflict_ids)
 
void refineMeshNearNuclei (std::vector< nucleus< dim > > newnuclei)
 
double weightedDistanceFromNucleusCenter (const dealii::Point< dim, double > center, const std::vector< double > semiaxes, const dealii::Point< dim, double > q_point_loc, const unsigned int var_index) const
 
dealii::VectorizedArray< double > weightedDistanceFromNucleusCenter (const dealii::Point< dim, double > center, const std::vector< double > semiaxes, const dealii::Point< dim, dealii::VectorizedArray< double > > q_point_loc, const unsigned int var_index) const
 
virtual double getNucleationProbability (variableValueContainer, double, dealii::Point< dim >, unsigned int variable_index) const
 
unsigned int getFieldIndex (std::string _name)
 
void outputFreeEnergy (const std::vector< double > &freeEnergyValues) const
 
void computeIntegral (double &integratedField, int index, std::vector< vectorType *> postProcessedSet)
 
void computeIntegralMF (double &integratedField, int index, const std::vector< vectorType *> postProcessedSet)
 
void getIntegralMF (const MatrixFree< dim, double > &data, std::vector< vectorType *> &dst, const std::vector< vectorType *> &src, const std::pair< unsigned int, unsigned int > &cell_range)
 

Protected Attributes

userInputParameters< dim > userInputs
 
unsigned int totalDOFs
 
variableAttributeLoader var_attributes
 
std::vector< SimplifiedGrainRepresentation< dim > > simplified_grain_representations
 
parallel::distributed::Triangulation< dim > triangulation
 
std::vector< FESystem< dim > * > FESet
 
std::vector< const ConstraintMatrix * > constraintsDirichletSet
 
std::vector< const ConstraintMatrix * > constraintsOtherSet
 
std::vector< const DoFHandler< dim > * > dofHandlersSet
 
std::vector< const IndexSet * > locally_relevant_dofsSet
 
std::vector< ConstraintMatrix * > constraintsDirichletSet_nonconst
 
std::vector< ConstraintMatrix * > constraintsOtherSet_nonconst
 
std::vector< DoFHandler< dim > * > dofHandlersSet_nonconst
 
std::vector< IndexSet * > locally_relevant_dofsSet_nonconst
 
std::vector< vectorType * > solutionSet
 
std::vector< vectorType * > residualSet
 
std::vector< parallel::distributed::SolutionTransfer< dim, vectorType > * > soltransSet
 
DoFHandler< dim > * vector_dofHandler
 
FESystem< dim > * vector_fe
 
MatrixFree< dim, double > vector_matrixFreeObject
 
MatrixFree< dim, double > matrixFreeObject
 
vectorType invM
 
vectorType dU_vector
 
vectorType dU_scalar
 
unsigned int currentFieldIndex
 
bool generatingInitialGuess
 
std::vector< std::map< dealii::types::global_dof_index, double > * > valuesDirichletSet
 
std::vector< nucleus< dim > > nuclei
 
std::vector< double > freeEnergyValues
 
bool isTimeDependentBVP
 
bool isEllipticBVP
 
bool hasExplicitEquation
 
bool hasNonExplicitEquation
 
bool has_Dirichlet_BCs
 
unsigned int parabolicFieldIndex
 
unsigned int ellipticFieldIndex
 
double currentTime
 
unsigned int currentIncrement
 
unsigned int currentOutput
 
unsigned int currentCheckpoint
 
unsigned int current_grain_reassignment
 
TimerOutput computing_timer
 
std::vector< double > integrated_postprocessed_fields
 
bool first_integrated_var_output_complete
 
double integrated_var
 
unsigned int integral_index
 
dealii::Threads::Mutex assembler_lock
 

Static Protected Attributes

static const unsigned int CIJ_tensor_size = 2*dim-1+dim/3
 

Detailed Description

template<int dim, int degree>
class MatrixFreePDE< dim, degree >

This is the abstract base class for the matrix free implementation of Parabolic and Elliptic BVP's, and supports MPI, Threads and Vectorization (Hybrid Parallel). This class contains the parallel data structures, mesh (referred to as triangulation), parallel degrees of freedom distribution, constraints, and general utility methods.

All the physical models in this package inherit this base class.

Definition at line 67 of file matrixFreePDE.h.

Constructor & Destructor Documentation

◆ MatrixFreePDE()

MatrixFreePDE ( userInputParameters< dim >  _userInputs)

Class contructor

Definition at line 8 of file matrixFreePDE.cc.

◆ ~MatrixFreePDE()

~MatrixFreePDE ( )

Definition at line 33 of file matrixFreePDE.cc.

Member Function Documentation

◆ adaptiveRefine()

void adaptiveRefine ( unsigned int  _currentIncrement)
protected

Definition at line 8 of file refine.cc.

◆ adaptiveRefineCriterion()

void adaptiveRefineCriterion ( )
protectedvirtual

Definition at line 45 of file refine.cc.

◆ applyDirichletBCs()

void applyDirichletBCs ( )
protected

Method for applying Dirichlet boundary conditions.

Definition at line 75 of file boundaryConditions.cc.

◆ applyInitialConditions()

void applyInitialConditions ( )
protected

Definition at line 38 of file initialConditions.cc.

◆ applyNeumannBCs()

void applyNeumannBCs ( )
protected

Method for applying Neumann boundary conditions.

Definition at line 12 of file boundaryConditions.cc.

◆ buildFields()

void buildFields ( )

Definition at line 16 of file buildFields.cc.

◆ computeExplicitRHS()

void computeExplicitRHS ( )
protected

Definition at line 8 of file computeRHS.cc.

◆ computeIntegral()

void computeIntegral ( double &  integratedField,
int  index,
std::vector< vectorType *>  postProcessedSet 
)
protected

Definition at line 5 of file computeIntegral.cc.

◆ computeIntegralMF()

void computeIntegralMF ( double &  integratedField,
int  index,
const std::vector< vectorType *>  postProcessedSet 
)
protected

Definition at line 45 of file computeIntegral.cc.

◆ computeInvM()

void computeInvM ( )
protected

Definition at line 7 of file invM.cc.

◆ computeLaplaceRHS()

void computeLaplaceRHS ( unsigned int  fieldIndex)
protected

Definition at line 93 of file setNonlinearEqInitialGuess.cc.

◆ computeNonexplicitRHS()

void computeNonexplicitRHS ( )
protected

Definition at line 58 of file computeRHS.cc.

◆ computePostProcessedFields()

void computePostProcessedFields ( std::vector< vectorType *> &  postProcessedSet)
protected

Definition at line 5 of file postprocessor.cc.

◆ equationLHS()

virtual void equationLHS ( variableContainer< dim, degree, dealii::VectorizedArray< double > > &  variable_list,
dealii::Point< dim, dealii::VectorizedArray< double > >  q_point_loc 
) const
protectedpure virtual

Implemented in testInvM< dim, degree >, and setRigidBodyModeConstraintsTest< dim, degree >.

◆ explicitEquationRHS()

virtual void explicitEquationRHS ( variableContainer< dim, degree, dealii::VectorizedArray< double > > &  variable_list,
dealii::Point< dim, dealii::VectorizedArray< double > >  q_point_loc 
) const
protectedpure virtual

Implemented in testInvM< dim, degree >, and setRigidBodyModeConstraintsTest< dim, degree >.

◆ getComponentsWithRigidBodyModes()

void getComponentsWithRigidBodyModes ( std::vector< int > &  rigidBodyModeComponents) const
protected

Definition at line 197 of file boundaryConditions.cc.

◆ getExplicitRHS()

void getExplicitRHS ( const MatrixFree< dim, double > &  data,
std::vector< vectorType *> &  dst,
const std::vector< vectorType *> &  src,
const std::pair< unsigned int, unsigned int > &  cell_range 
) const
protected

Definition at line 27 of file computeRHS.cc.

◆ getFieldIndex()

unsigned int getFieldIndex ( std::string  _name)
protected

Definition at line 7 of file utilities.cc.

◆ getIntegralMF()

void getIntegralMF ( const MatrixFree< dim, double > &  data,
std::vector< vectorType *> &  dst,
const std::vector< vectorType *> &  src,
const std::pair< unsigned int, unsigned int > &  cell_range 
)
protected

Definition at line 62 of file computeIntegral.cc.

◆ getLaplaceLHS()

void getLaplaceLHS ( const MatrixFree< dim, double > &  data,
vectorType &  dst,
const vectorType &  src,
const std::pair< unsigned int, unsigned int > &  cell_range 
) const
protected

Definition at line 131 of file setNonlinearEqInitialGuess.cc.

◆ getLaplaceRHS()

void getLaplaceRHS ( const MatrixFree< dim, double > &  data,
vectorType &  dst,
const vectorType &  src,
const std::pair< unsigned int, unsigned int > &  cell_range 
) const
protected

Definition at line 109 of file setNonlinearEqInitialGuess.cc.

◆ getLHS()

void getLHS ( const MatrixFree< dim, double > &  data,
vectorType &  dst,
const vectorType &  src,
const std::pair< unsigned int, unsigned int > &  cell_range 
) const
protected

Definition at line 37 of file computeLHS.cc.

◆ getLocalNucleiList()

void getLocalNucleiList ( std::vector< nucleus< dim > > &  newnuclei) const
protected

Definition at line 93 of file nucleation.cc.

◆ getNewNuclei()

std::vector< nucleus< dim > > getNewNuclei ( )
protected

Definition at line 65 of file nucleation.cc.

◆ getNonexplicitRHS()

void getNonexplicitRHS ( const MatrixFree< dim, double > &  data,
std::vector< vectorType *> &  dst,
const std::vector< vectorType *> &  src,
const std::pair< unsigned int, unsigned int > &  cell_range 
) const
protected

Definition at line 77 of file computeRHS.cc.

◆ getNucleationProbability()

virtual double getNucleationProbability ( variableValueContainer  ,
double  ,
dealii::Point< dim >  ,
unsigned int  variable_index 
) const
inlineprotectedvirtual

Definition at line 329 of file matrixFreePDE.h.

◆ getPostProcessedFields()

void getPostProcessedFields ( const dealii::MatrixFree< dim, double > &  data,
std::vector< vectorType *> &  dst,
const std::vector< vectorType *> &  src,
const std::pair< unsigned int, unsigned int > &  cell_range 
)
protected

Definition at line 27 of file postprocessor.cc.

◆ init()

void init ( )
virtual

Initializes the mesh, degrees of freedom, constraints and data structures using the user provided inputs in the application parameters file.

Definition at line 9 of file init.cc.

◆ initForTests()

void initForTests ( )

Initializes the data structures for enabling unit tests.

This method initializes the MatrixFreePDE object with a fixed geometry, discretization and other custom selected options specifically to help with unit tests, and should not be called in any of the physical models.

Definition at line 7 of file initForTests.cc.

◆ load_checkpoint_fields()

void load_checkpoint_fields ( )
protected

Definition at line 124 of file checkpoint.cc.

◆ load_checkpoint_time_info()

void load_checkpoint_time_info ( )
protected

Definition at line 165 of file checkpoint.cc.

◆ load_checkpoint_triangulation()

void load_checkpoint_triangulation ( )
protected

Definition at line 103 of file checkpoint.cc.

◆ makeTriangulation()

void makeTriangulation ( parallel::distributed::Triangulation< dim > &  tria) const
virtual

Definition at line 273 of file init.cc.

◆ markBoundaries()

void markBoundaries ( parallel::distributed::Triangulation< dim > &  tria) const
protected

Definition at line 9 of file markBoundaries.cc.

◆ move_file()

void move_file ( const std::string &  old_name,
const std::string &  new_name 
)
protected

Definition at line 187 of file checkpoint.cc.

◆ nonExplicitEquationRHS()

virtual void nonExplicitEquationRHS ( variableContainer< dim, degree, dealii::VectorizedArray< double > > &  variable_list,
dealii::Point< dim, dealii::VectorizedArray< double > >  q_point_loc 
) const
protectedpure virtual

Implemented in testInvM< dim, degree >, and setRigidBodyModeConstraintsTest< dim, degree >.

◆ outputFreeEnergy()

void outputFreeEnergy ( const std::vector< double > &  freeEnergyValues) const
protected

◆ outputResults()

void outputResults ( )
protected

Definition at line 8 of file outputResults.cc.

◆ postProcessedFields()

virtual void postProcessedFields ( const variableContainer< dim, degree, dealii::VectorizedArray< double > > &  variable_list,
variableContainer< dim, degree, dealii::VectorizedArray< double > > &  pp_variable_list,
const dealii::Point< dim, dealii::VectorizedArray< double > >  q_point_loc 
) const
inlineprotectedvirtual

Definition at line 266 of file matrixFreePDE.h.

◆ reassignGrains()

void reassignGrains ( )
protected

Method to reassign grains when multiple grains are stored in a single order parameter.

Definition at line 10 of file reassignGrains.cc.

◆ refineGrid()

void refineGrid ( )
protected

Definition at line 126 of file refine.cc.

◆ refineMeshNearNuclei()

void refineMeshNearNuclei ( std::vector< nucleus< dim > >  newnuclei)
protected

Definition at line 309 of file nucleation.cc.

◆ reinit()

void reinit ( )
protected

Definition at line 7 of file reinit.cc.

◆ safetyCheckNewNuclei()

void safetyCheckNewNuclei ( std::vector< nucleus< dim > >  newnuclei,
std::vector< unsigned int > &  conflict_ids 
)
protected

Definition at line 255 of file nucleation.cc.

◆ save_checkpoint()

void save_checkpoint ( )
protected

Definition at line 11 of file checkpoint.cc.

◆ setInitialCondition()

virtual void setInitialCondition ( const dealii::Point< dim > &  p,
const unsigned int  index,
double &  scalar_IC,
dealii::Vector< double > &  vector_IC 
)
pure virtual

Implemented in testInvM< dim, degree >, and setRigidBodyModeConstraintsTest< dim, degree >.

◆ setNonlinearEqInitialGuess()

void setNonlinearEqInitialGuess ( )
protected

Definition at line 8 of file setNonlinearEqInitialGuess.cc.

◆ setNonUniformDirichletBCs()

virtual void setNonUniformDirichletBCs ( const dealii::Point< dim > &  p,
const unsigned int  index,
const unsigned int  direction,
const double  time,
double &  scalar_BC,
dealii::Vector< double > &  vector_BC 
)
pure virtual

Implemented in testInvM< dim, degree >, and setRigidBodyModeConstraintsTest< dim, degree >.

◆ setPeriodicity()

void setPeriodicity ( )
protected

Definition at line 151 of file boundaryConditions.cc.

◆ setPeriodicityConstraints()

void setPeriodicityConstraints ( ConstraintMatrix *  constraints,
const DoFHandler< dim > *  dof_handler 
) const
protected

Definition at line 172 of file boundaryConditions.cc.

◆ setRigidBodyModeConstraints()

void setRigidBodyModeConstraints ( const std::vector< int >  rigidBodyModeComponents,
ConstraintMatrix *  constraints,
const DoFHandler< dim > *  dof_handler 
) const
protected

Definition at line 238 of file boundaryConditions.cc.

◆ solve()

void solve ( )

This method implements the time stepping algorithm and invokes the solveIncrement() method.

Definition at line 7 of file solve.cc.

◆ solveIncrement()

void solveIncrement ( bool  skip_time_dependent)
protectedvirtual

Method to solve each time increment of a time-dependent problem. For time-independent problems this method is called only once. This method solves for all the fields in a staggered manner (one after another) and also invokes the corresponding solvers: Explicit solver for Parabolic problems, Implicit (matrix-free) solver for Elliptic problems.

Definition at line 8 of file solveIncrement.cc.

◆ updateNucleiList()

void updateNucleiList ( )
protected

Definition at line 12 of file nucleation.cc.

◆ verify_checkpoint_file_exists()

void verify_checkpoint_file_exists ( const std::string  filename)
protected

Definition at line 216 of file checkpoint.cc.

◆ vmult()

void vmult ( vectorType &  dst,
const vectorType &  src 
) const

This method essentially converts the MatrixFreePDE object into a matrix object which can be used with matrix free iterative solvers. Provides the A*x functionality for solving the system of equations AX=b.

Definition at line 7 of file computeLHS.cc.

◆ weightedDistanceFromNucleusCenter() [1/2]

double weightedDistanceFromNucleusCenter ( const dealii::Point< dim, double >  center,
const std::vector< double >  semiaxes,
const dealii::Point< dim, double >  q_point_loc,
const unsigned int  var_index 
) const
protected

Definition at line 375 of file nucleation.cc.

◆ weightedDistanceFromNucleusCenter() [2/2]

dealii::VectorizedArray< double > weightedDistanceFromNucleusCenter ( const dealii::Point< dim, double >  center,
const std::vector< double >  semiaxes,
const dealii::Point< dim, dealii::VectorizedArray< double > >  q_point_loc,
const unsigned int  var_index 
) const
protected

Definition at line 399 of file nucleation.cc.

Member Data Documentation

◆ assembler_lock

dealii::Threads::Mutex assembler_lock
protected

Definition at line 365 of file matrixFreePDE.h.

◆ CIJ_tensor_size

const unsigned int CIJ_tensor_size = 2*dim-1+dim/3
staticprotected

Definition at line 131 of file matrixFreePDE.h.

◆ computing_timer

TimerOutput computing_timer
mutableprotected

Definition at line 356 of file matrixFreePDE.h.

◆ constraintsDirichletSet

std::vector<const ConstraintMatrix*> constraintsDirichletSet
protected

Definition at line 168 of file matrixFreePDE.h.

◆ constraintsDirichletSet_nonconst

std::vector<ConstraintMatrix*> constraintsDirichletSet_nonconst
protected

Definition at line 178 of file matrixFreePDE.h.

◆ constraintsOtherSet

std::vector<const ConstraintMatrix*> constraintsOtherSet
protected

Definition at line 168 of file matrixFreePDE.h.

◆ constraintsOtherSet_nonconst

std::vector<ConstraintMatrix*> constraintsOtherSet_nonconst
protected

Definition at line 178 of file matrixFreePDE.h.

◆ current_grain_reassignment

unsigned int current_grain_reassignment
protected

Definition at line 353 of file matrixFreePDE.h.

◆ currentCheckpoint

unsigned int currentCheckpoint
protected

Definition at line 353 of file matrixFreePDE.h.

◆ currentFieldIndex

unsigned int currentFieldIndex
protected

Definition at line 207 of file matrixFreePDE.h.

◆ currentIncrement

unsigned int currentIncrement
protected

Definition at line 353 of file matrixFreePDE.h.

◆ currentOutput

unsigned int currentOutput
protected

Definition at line 353 of file matrixFreePDE.h.

◆ currentTime

double currentTime
protected

Definition at line 352 of file matrixFreePDE.h.

◆ dofHandlersSet

std::vector<const DoFHandler<dim>*> dofHandlersSet
protected

Definition at line 171 of file matrixFreePDE.h.

◆ dofHandlersSet_nonconst

std::vector<DoFHandler<dim>*> dofHandlersSet_nonconst
protected

Definition at line 180 of file matrixFreePDE.h.

◆ dU_scalar

vectorType dU_scalar
protected

Definition at line 203 of file matrixFreePDE.h.

◆ dU_vector

vectorType dU_vector
protected

Definition at line 203 of file matrixFreePDE.h.

◆ ellipticFieldIndex

unsigned int ellipticFieldIndex
protected

Definition at line 351 of file matrixFreePDE.h.

◆ FESet

std::vector<FESystem<dim>*> FESet
protected

Definition at line 163 of file matrixFreePDE.h.

◆ fields

std::vector<Field<dim> > fields

Vector of all the physical fields in the problem. Fields are identified by dimentionality (SCALAR/VECTOR), the kind of PDE (ELLIPTIC/PARABOLIC) used to compute them and a character identifier (e.g.: "c" for composition) which is used to write the fields to the output files.

Definition at line 107 of file matrixFreePDE.h.

◆ first_integrated_var_output_complete

bool first_integrated_var_output_complete
protected

Definition at line 360 of file matrixFreePDE.h.

◆ freeEnergyValues

std::vector<double> freeEnergyValues
protected

Definition at line 335 of file matrixFreePDE.h.

◆ generatingInitialGuess

bool generatingInitialGuess
protected

Definition at line 231 of file matrixFreePDE.h.

◆ has_Dirichlet_BCs

bool has_Dirichlet_BCs
protected

Definition at line 349 of file matrixFreePDE.h.

◆ hasExplicitEquation

bool hasExplicitEquation
protected

Definition at line 347 of file matrixFreePDE.h.

◆ hasNonExplicitEquation

bool hasNonExplicitEquation
protected

Definition at line 348 of file matrixFreePDE.h.

◆ integral_index

unsigned int integral_index
protected

Definition at line 364 of file matrixFreePDE.h.

◆ integrated_postprocessed_fields

std::vector<double> integrated_postprocessed_fields
protected

Definition at line 358 of file matrixFreePDE.h.

◆ integrated_var

double integrated_var
protected

Definition at line 363 of file matrixFreePDE.h.

◆ invM

vectorType invM
protected

Definition at line 201 of file matrixFreePDE.h.

◆ isEllipticBVP

bool isEllipticBVP
protected

Definition at line 345 of file matrixFreePDE.h.

◆ isTimeDependentBVP

bool isTimeDependentBVP
protected

Definition at line 343 of file matrixFreePDE.h.

◆ locally_relevant_dofsSet

std::vector<const IndexSet*> locally_relevant_dofsSet
protected

Definition at line 176 of file matrixFreePDE.h.

◆ locally_relevant_dofsSet_nonconst

std::vector<IndexSet*> locally_relevant_dofsSet_nonconst
protected

Definition at line 182 of file matrixFreePDE.h.

◆ matrixFreeObject

MatrixFree<dim,double> matrixFreeObject
protected

Definition at line 199 of file matrixFreePDE.h.

◆ nuclei

std::vector<nucleus<dim> > nuclei
protected

Definition at line 316 of file matrixFreePDE.h.

◆ parabolicFieldIndex

unsigned int parabolicFieldIndex
protected

Definition at line 351 of file matrixFreePDE.h.

◆ pcout

ConditionalOStream pcout

Definition at line 112 of file matrixFreePDE.h.

◆ residualSet

std::vector<vectorType*> residualSet
protected

Definition at line 186 of file matrixFreePDE.h.

◆ simplified_grain_representations

std::vector<SimplifiedGrainRepresentation<dim> > simplified_grain_representations
protected

Definition at line 141 of file matrixFreePDE.h.

◆ soltransSet

std::vector<parallel::distributed::SolutionTransfer<dim, vectorType>*> soltransSet
protected

Definition at line 188 of file matrixFreePDE.h.

◆ solutionSet

std::vector<vectorType*> solutionSet
protected

Definition at line 184 of file matrixFreePDE.h.

◆ totalDOFs

unsigned int totalDOFs
protected

Definition at line 123 of file matrixFreePDE.h.

◆ triangulation

parallel::distributed::Triangulation<dim> triangulation
protected

Definition at line 159 of file matrixFreePDE.h.

◆ userInputs

userInputParameters<dim> userInputs
protected

Definition at line 121 of file matrixFreePDE.h.

◆ valuesDirichletSet

std::vector<std::map<dealii::types::global_dof_index, double>*> valuesDirichletSet
protected

Definition at line 278 of file matrixFreePDE.h.

◆ var_attributes

variableAttributeLoader var_attributes
protected

Definition at line 128 of file matrixFreePDE.h.

◆ vector_dofHandler

DoFHandler<dim>* vector_dofHandler
protected

Definition at line 191 of file matrixFreePDE.h.

◆ vector_fe

FESystem<dim>* vector_fe
protected

Definition at line 192 of file matrixFreePDE.h.

◆ vector_matrixFreeObject

MatrixFree<dim,double> vector_matrixFreeObject
protected

Definition at line 193 of file matrixFreePDE.h.

The documentation for this class was generated from the following files: