CASM::GenericOrbitree< ClustType > Member List

This is the complete list of members for CASM::GenericOrbitree< ClustType >, including all inherited members.

_asym_unit() const	CASM::GenericOrbitree< ClustType >	inlineprivate
_generate_asym_unit(const Structure &prim)	CASM::GenericOrbitree< ClustType >	private
_populate_site_bases()	CASM::GenericOrbitree< ClustType >	private
add_subclusters(const ClustType &big_clust, const Structure &prim, bool verbose=false)	CASM::GenericOrbitree< ClustType >
all_in(const Array &superset) const	CASM::Array< GenericOrbitBranch< ClustType > >
almost_contains(const GenericOrbitBranch< ClustType > &test_elem, double tol_val=TOL) const	CASM::Array< GenericOrbitBranch< ClustType > >	inline
almost_find(const GenericOrbitBranch< ClustType > &test_elem, double tol_val=TOL) const	CASM::Array< GenericOrbitBranch< ClustType > >
almost_reverse_find(const GenericOrbitBranch< ClustType > &test_elem, double tol_val=TOL) const	CASM::Array< GenericOrbitBranch< ClustType > >
append(const Array &new_tail)	CASM::Array< GenericOrbitBranch< ClustType > >
append_unique(const Array &new_tail)	CASM::Array< GenericOrbitBranch< ClustType > >
apply_sym(const SymOp &op)	CASM::GenericOrbitree< ClustType >
Array()	CASM::Array< GenericOrbitBranch< ClustType > >	inline
Array(Index init_N)	CASM::Array< GenericOrbitBranch< ClustType > >	inline
Array(Index init_N, const GenericOrbitBranch< ClustType > &init_val)	CASM::Array< GenericOrbitBranch< ClustType > >	inline
Array(const Array &RHS)	CASM::Array< GenericOrbitBranch< ClustType > >	inline
Array(Iterator begin, Iterator end, typename CASM_TMP::enable_if_iterator< Iterator >::type *=nullptr)	CASM::Array< GenericOrbitBranch< ClustType > >	inline
Array(std::initializer_list< GenericOrbitBranch< ClustType > > in)	CASM::Array< GenericOrbitBranch< ClustType > >	inline
Array(ReturnArray< GenericOrbitBranch< ClustType > > &RHS)	CASM::Array< GenericOrbitBranch< ClustType > >
as_perm_inverse() const	CASM::Array< GenericOrbitBranch< ClustType > >
as_perm_transform_by(const Array< Index > &trans_perm) const	CASM::Array< GenericOrbitBranch< ClustType > >
asym_unit() const	CASM::GenericOrbitree< ClustType >	inline
at(Index ind)	CASM::Array< GenericOrbitBranch< ClustType > >	inline
at(Index ind) const	CASM::Array< GenericOrbitBranch< ClustType > >	inline
back()	CASM::Array< GenericOrbitBranch< ClustType > >	inline
back() const	CASM::Array< GenericOrbitBranch< ClustType > >	inline
basis_set_size() const	CASM::GenericOrbitree< ClustType >
begin() const	CASM::Array< GenericOrbitBranch< ClustType > >	inline
begin()	CASM::Array< GenericOrbitBranch< ClustType > >	inline
bspecs() const	CASM::GenericOrbitree< ClustType >	inline
cbegin() const	CASM::Array< GenericOrbitBranch< ClustType > >	inline
cend() const	CASM::Array< GenericOrbitBranch< ClustType > >	inline
clear()	CASM::Array< GenericOrbitBranch< ClustType > >	inline
coincidence(const Array &superset) const	CASM::Array< GenericOrbitBranch< ClustType > >
collect_basis_info(const Structure &struc)	CASM::GenericOrbitree< ClustType >
const_iterator typedef	CASM::Array< GenericOrbitBranch< ClustType > >
contains(const ClustType &test_clust)	CASM::GenericOrbitree< ClustType >
contains(const GenericOrbit< ClustType > &test_orbit)	CASM::GenericOrbitree< ClustType >
Array< GenericOrbitBranch< ClustType > >::contains(const GenericOrbitBranch< ClustType > &test_elem) const	CASM::Array< GenericOrbitBranch< ClustType > >	inline
end() const	CASM::Array< GenericOrbitBranch< ClustType > >	inline
end()	CASM::Array< GenericOrbitBranch< ClustType > >	inline
equiv(Index np, Index no, Index ne) const	CASM::GenericOrbitree< ClustType >
equiv(Index np, Index no, Index ne)	CASM::GenericOrbitree< ClustType >
find(const ClustType &test_clust) const	CASM::GenericOrbitree< ClustType >
find(const GenericOrbit< ClustType > &test_orbit) const	CASM::GenericOrbitree< ClustType >
find(const ClustType &test_clust, Index nb) const	CASM::GenericOrbitree< ClustType >
Array< GenericOrbitBranch< ClustType > >::find(const GenericOrbitBranch< ClustType > &test_elem) const	CASM::Array< GenericOrbitBranch< ClustType > >
from_json(const jsonParser &json)	CASM::GenericOrbitree< ClustType >
generate_clust_bases(std::vector< BasisSet const * > const &global_args, Index max_poly_order=-1)	CASM::GenericOrbitree< ClustType >
generate_clust_bases(Index max_poly_order=-1)	CASM::GenericOrbitree< ClustType >
generate_decorated_orbitree(const GenericOrbitree< ClustType > &in_tree, const SymGroup &symgroup, PERIODICITY_TYPE ptype, bool full_decor=false)	CASM::GenericOrbitree< ClustType >
generate_hop_orbitree(const GenericOrbitree< SiteCluster > &in_tree, const Structure &prim)	CASM::GenericOrbitree< ClustType >
generate_in_cell(const Structure &prim, const Lattice &cell, int num_images=0)	CASM::GenericOrbitree< ClustType >
generate_local_orbitree(const Structure &prim, const PhenomType &tmp_phenom_clust, bool include_phenom_clust_sites)	CASM::GenericOrbitree< ClustType >
generate_orbitree(const Structure &prim, bool verbose=false)	CASM::GenericOrbitree< ClustType >
generate_orbitree(const Structure &prim, const int maxClust)	CASM::GenericOrbitree< ClustType >
generate_orbitree_from_proto_file(std::string filename, const SymGroup &sym_group, PERIODICITY_TYPE ptype)	CASM::GenericOrbitree< ClustType >
generate_orbitree_neighbour(const Structure &prim, const Array< int > maxNeighbour)	CASM::GenericOrbitree< ClustType >
generate_orbitree_TB(const Structure &prim)	CASM::GenericOrbitree< ClustType >
GenericOrbitree(const Lattice &t_lat, double _tol)	CASM::GenericOrbitree< ClustType >	inline
GenericOrbitree(const GenericOrbitree< ClustType > &starttree)	CASM::GenericOrbitree< ClustType >
get_clusters_by_site(const GenericOrbitree< ClustType > &in_tree, GenericOrbitree< ClustType > &out_tree, int num_sites)	CASM::GenericOrbitree< ClustType >
get_dynamical_matrix(MatrixXcd &dmat, const Coordinate &k, Index bands_per_site)	CASM::GenericOrbitree< ClustType >
get_hierarchy() const	CASM::GenericOrbitree< ClustType >
get_index() const	CASM::GenericOrbitree< ClustType >
get_s2s_vec()	CASM::GenericOrbitree< ClustType >
has_fixed_points() const	CASM::Array< GenericOrbitBranch< ClustType > >
incidences(const GenericOrbitBranch< ClustType > &test_elem) const	CASM::Array< GenericOrbitBranch< ClustType > >
index	CASM::GenericOrbitree< ClustType >	mutable
index_to_column	CASM::GenericOrbitree< ClustType >	mutable
index_to_row	CASM::GenericOrbitree< ClustType >	mutable
ipermute(const Array< Index > &perm_array)	CASM::Array< GenericOrbitBranch< ClustType > >
is_ascending() const	CASM::Array< GenericOrbitBranch< ClustType > >
is_constant() const	CASM::Array< GenericOrbitBranch< ClustType > >
is_descending() const	CASM::Array< GenericOrbitBranch< ClustType > >
is_permute() const	CASM::Array< GenericOrbitBranch< ClustType > >
iterator typedef	CASM::Array< GenericOrbitBranch< ClustType > >
lattice	CASM::GenericOrbitree< ClustType >
m_asym_unit	CASM::GenericOrbitree< ClustType >	private
m_b2asym	CASM::GenericOrbitree< ClustType >	private
m_bspecs	CASM::GenericOrbitree< ClustType >	private
m_tol	CASM::GenericOrbitree< ClustType >
max() const	CASM::Array< GenericOrbitBranch< ClustType > >
max_length	CASM::GenericOrbitree< ClustType >
max_num_sites	CASM::GenericOrbitree< ClustType >
min() const	CASM::Array< GenericOrbitBranch< ClustType > >
min_length	CASM::GenericOrbitree< ClustType >
min_num_components	CASM::GenericOrbitree< ClustType >
next_permute()	CASM::Array< GenericOrbitBranch< ClustType > >
Norbits	CASM::GenericOrbitree< ClustType >	mutable
num_clusts	CASM::GenericOrbitree< ClustType >
operator!=(const Array< GenericOrbitBranch< ClustType > > &RHS) const	CASM::Array< GenericOrbitBranch< ClustType > >	inline
operator<(const Array< GenericOrbitBranch< ClustType > > &RHS) const	CASM::Array< GenericOrbitBranch< ClustType > >
operator<=(const Array< GenericOrbitBranch< ClustType > > &RHS) const	CASM::Array< GenericOrbitBranch< ClustType > >	inline
operator=(const GenericOrbitree< ClustType > &RHS)	CASM::GenericOrbitree< ClustType >
Array< GenericOrbitBranch< ClustType > >::operator=(const Array &RHS)	CASM::Array< GenericOrbitBranch< ClustType > >
Array< GenericOrbitBranch< ClustType > >::operator=(ReturnArray< GenericOrbitBranch< ClustType > > &RHS)	CASM::Array< GenericOrbitBranch< ClustType > >
operator==(const Array< GenericOrbitBranch< ClustType > > &RHS) const	CASM::Array< GenericOrbitBranch< ClustType > >
operator>(const Array< GenericOrbitBranch< ClustType > > &RHS) const	CASM::Array< GenericOrbitBranch< ClustType > >
operator>=(const Array< GenericOrbitBranch< ClustType > > &RHS) const	CASM::Array< GenericOrbitBranch< ClustType > >	inline
operator[](Index ind) const	CASM::Array< GenericOrbitBranch< ClustType > >	inline
operator[](Index ind)	CASM::Array< GenericOrbitBranch< ClustType > >	inline
orbit(Index np, Index no)	CASM::GenericOrbitree< ClustType >
orbit(Index np, Index no) const	CASM::GenericOrbitree< ClustType >
permute(const Array< Index > &perm_array)	CASM::Array< GenericOrbitBranch< ClustType > >
pop_back()	CASM::Array< GenericOrbitBranch< ClustType > >	inline
print(std::ostream &stream) const	CASM::GenericOrbitree< ClustType >
print_column(std::ostream &stream, const std::string &indent="") const	CASM::Array< GenericOrbitBranch< ClustType > >
print_eci_in(std::ostream &out) const	CASM::GenericOrbitree< ClustType >
print_full_basis_info(std::ostream &out) const	CASM::GenericOrbitree< ClustType >
print_full_clust(std::ostream &out) const	CASM::GenericOrbitree< ClustType >
print_full_decorated_clust(std::ostream &out) const	CASM::GenericOrbitree< ClustType >
print_proto_clust(std::ostream &out) const	CASM::GenericOrbitree< ClustType >
print_proto_clust_funcs(std::ostream &out) const	CASM::GenericOrbitree< ClustType >
print_proto_decorated_clust(std::ostream &out) const	CASM::GenericOrbitree< ClustType >
prototype(Index np, Index no) const	CASM::GenericOrbitree< ClustType >
prototype(Index np, Index no)	CASM::GenericOrbitree< ClustType >
push_back(const GenericOrbit< ClustType > &new_orbit)	CASM::GenericOrbitree< ClustType >
push_back(const GenericOrbitBranch< ClustType > &new_branch)	CASM::GenericOrbitree< ClustType >
read(std::istream &stream, int num_sites, COORD_TYPE mode)	CASM::GenericOrbitree< ClustType >
read(std::istream &stream, COORD_TYPE mode)	CASM::GenericOrbitree< ClustType >
read_CSPECS(std::istream &stream)	CASM::GenericOrbitree< ClustType >
read_custom_clusters_from_json(const jsonParser &json, const Structure &struc, const SymGroup &sym_group, bool verbose=false)	CASM::GenericOrbitree< ClustType >
read_orbitree_from_json(const std::string &json_file_name, const SymGroup &sym_group, const Structure &ref_struc)	CASM::GenericOrbitree< ClustType >
remove(Index ind)	CASM::Array< GenericOrbitBranch< ClustType > >
reserve(Index new_max)	CASM::Array< GenericOrbitBranch< ClustType > >
resize(Index NP)	CASM::GenericOrbitree< ClustType >
Array< GenericOrbitBranch< ClustType > >::resize(Index new_N, const GenericOrbitBranch< ClustType > &fill_val)	CASM::Array< GenericOrbitBranch< ClustType > >
reverse_find(const GenericOrbitBranch< ClustType > &test_elem) const	CASM::Array< GenericOrbitBranch< ClustType > >
sequence(const GenericOrbitBranch< ClustType > &initial, const GenericOrbitBranch< ClustType > &final)	CASM::Array< GenericOrbitBranch< ClustType > >	static
sequence(const GenericOrbitBranch< ClustType > &initial, const GenericOrbitBranch< ClustType > &increment, const GenericOrbitBranch< ClustType > &final)	CASM::Array< GenericOrbitBranch< ClustType > >	static
set_bspecs(const jsonParser &_bspecs)	CASM::GenericOrbitree< ClustType >	inline
set_lattice(const Lattice &new_lat, COORD_TYPE mode)	CASM::GenericOrbitree< ClustType >
size(Index np) const	CASM::GenericOrbitree< ClustType >
size(Index np, Index no) const	CASM::GenericOrbitree< ClustType >
Array< GenericOrbitBranch< ClustType > >::size() const	CASM::Array< GenericOrbitBranch< ClustType > >	inline
size_type typedef	CASM::Array< GenericOrbitBranch< ClustType > >
sort()	CASM::GenericOrbitree< ClustType >
sort(Index np)	CASM::GenericOrbitree< ClustType >
Array< GenericOrbitBranch< ClustType > >::sort(const CompareType &comp)	CASM::Array< GenericOrbitBranch< ClustType > >
Array< GenericOrbitBranch< ClustType > >::sort(Array< Index > &ind_order)	CASM::Array< GenericOrbitBranch< ClustType > >
sub_array(Index ind_begin, Index ind_end) const	CASM::Array< GenericOrbitBranch< ClustType > >
subcluster	CASM::GenericOrbitree< ClustType >	mutable
sum() const	CASM::Array< GenericOrbitBranch< ClustType > >
swap(Array< GenericOrbitBranch< ClustType > > &RHS)	CASM::Array< GenericOrbitBranch< ClustType > >
swap_elem(Index i, Index j)	CASM::Array< GenericOrbitBranch< ClustType > >	inline
tol() const	CASM::GenericOrbitree< ClustType >
trans_and_expand(const Array< Coordinate > &prim_grid, bool override=0)	CASM::GenericOrbitree< ClustType >
value_type typedef	CASM::Array< GenericOrbitBranch< ClustType > >
write_eci_in(std::string filename) const	CASM::GenericOrbitree< ClustType >
write_full_clust(std::string file) const	CASM::GenericOrbitree< ClustType >
write_full_decorated_clust(std::string file) const	CASM::GenericOrbitree< ClustType >
write_proto_clust(std::string file) const	CASM::GenericOrbitree< ClustType >
write_proto_decorated_clust(std::string file) const	CASM::GenericOrbitree< ClustType >
X1 typedef	CASM::Array< GenericOrbitBranch< ClustType > >
X2 typedef	CASM::Array< GenericOrbitBranch< ClustType > >
X3 typedef	CASM::Array< GenericOrbitBranch< ClustType > >
X4 typedef	CASM::Array< GenericOrbitBranch< ClustType > >
X5 typedef	CASM::Array< GenericOrbitBranch< ClustType > >
X6 typedef	CASM::Array< GenericOrbitBranch< ClustType > >
X7 typedef	CASM::Array< GenericOrbitBranch< ClustType > >
X8 typedef	CASM::Array< GenericOrbitBranch< ClustType > >
X9 typedef	CASM::Array< GenericOrbitBranch< ClustType > >
~Array()	CASM::Array< GenericOrbitBranch< ClustType > >	inline